API reference

• fast_conformation package
  • Subpackages
    • fast_conformation.ensemble_analysis package
      • Submodules
      • fast_conformation.ensemble_analysis.analysis_utils module
      • fast_conformation.ensemble_analysis.pca module
      • fast_conformation.ensemble_analysis.rmsd module
      • fast_conformation.ensemble_analysis.rmsf module
      • fast_conformation.ensemble_analysis.tmscore module
      • fast_conformation.ensemble_analysis.traj module
      • fast_conformation.ensemble_analysis.twodrmsd module
      • fast_conformation.ensemble_analysis.twotmscore module
      • Module contents
    • fast_conformation.gui package
      • Submodules
      • fast_conformation.gui.analysis_config module
      • fast_conformation.gui.build_msa module
      • fast_conformation.gui.dock_widget module
      • fast_conformation.gui.icons module
      • fast_conformation.gui.job_manager module
      • fast_conformation.gui.make_predictions module
      • fast_conformation.gui.plot_widget module
      • fast_conformation.gui.run_gui module
      • fast_conformation.gui.widget_base module
      • Module contents
    • fast_conformation.msa_generation package
      • Submodules
      • fast_conformation.msa_generation.colabfold module
      • fast_conformation.msa_generation.get_msa_jackhmmer module
      • fast_conformation.msa_generation.jackhmmer module
      • fast_conformation.msa_generation.msa_utils module
      • fast_conformation.msa_generation.pairmsa module
      • fast_conformation.msa_generation.parsers module
      • Module contents
  • Submodules
  • fast_conformation.fast_conformation module
  • fast_conformation.fast_conf_init module
    • main()
  • fast_conformation.jackhmmer_msa module
    • build_jackhmmer_msa()
    • build_msa()
    • convert_msa()
    • load_config()
    • main()
    • prepare_os()
    • reformat_sequences()
    • save_formatted_sequences_to_file()
  • fast_conformation.mmseqs2_msa module
    • copy_msa_and_clean()
    • get_mmseqs_msa()
    • load_config()
    • main()
    • remove_duplicate_sequences()
    • remove_first_line()
    • run_mmseqs2_msa()
    • save_config()
    • validate_inputs()
  • fast_conformation.pca_clustering module
    • main()
    • run_pca_analysis()
  • fast_conformation.predict_conformation module
  • fast_conformation.rmsd_mode1d module
    • main()
    • run_rmsd_analysis()
  • fast_conformation.rmsd_mode2d module
    • main()
    • run_2d_rmsd_analysis()
  • fast_conformation.rmsf_plddt module
    • main()
    • run_rmsf_analysis()
  • fast_conformation.save_traj module
    • run_trajectory_saving()
  • fast_conformation.tmscore_mode1d module
    • main()
    • run_tmscore_analysis()
  • fast_conformation.tmscore_mode2d module
    • main()
    • run_2d_tmscore_analysis()
  • Module contents